Exosome Research Hub

Exploring the Role of Exosomes in Cancer, Inflammation and Metabolic Diseases

RNA Analysis - Exosome Research Hub

RNA Analysis in Exosomes

Understanding the Role of Different RNA Types in Disease Progression

microRNA (miRNA) Analysis

Key miRNA Findings in Pancreatic Disease

miRNA Disease Association Function Expression Pattern
miR-21 Pancreatic Cancer, Inflammation Promotes tumor growth and metastasis Upregulated
miR-375 Diabetes, β-cell function Regulates insulin secretion Downregulated in diabetes
miR-155 Inflammation, Fibrosis Modulates immune response Upregulated
miR-200 EMT, Metastasis Controls epithelial phenotype Variable

Analysis Tools

  • qRT-PCR Analysis
  • Next-Generation Sequencing
  • Microarray Profiling
  • Northern Blotting

Circular RNA (circRNA) Analysis

Circular RNAs are unique RNA molecules that form a closed continuous loop. Their stable structure and tissue-specific expression patterns make them excellent biomarker candidates.

Key circRNAs in Pancreatic Disease

circRNA Target/Function Disease Impact Clinical Relevance
circ-LDLRAD3 miR-137-3p sponge Promotes tumor progression Diagnostic marker
circ-IARS Enhances tumor metastasis Increases permeability Prognostic indicator
circ-PDE8A miR-338 regulation Invasive progression Survival predictor

Detection Methods

Experimental Approaches
  • RNase R treatment
  • Divergent primer PCR
  • RNA-seq analysis
  • Northern blotting
Bioinformatics Tools
  • CIRI2
  • CircExplorer2
  • Find-circ
  • CircRNA_finder

Research Applications

  • Biomarker Development
  • Drug Target Discovery
  • Disease Monitoring
  • Therapeutic Design

Long Non-coding RNA (lncRNA) Analysis

Long non-coding RNAs are RNA transcripts longer than 200 nucleotides that don't encode proteins. They play crucial roles in gene regulation and disease development.

Significant lncRNAs in Pancreatic Disease

lncRNA Mechanism Disease Role Clinical Significance
HOTAIR Chromatin modification Promotes metastasis Poor prognosis marker
MALAT1 Splicing regulation Cell proliferation Therapeutic target
H19 miRNA regulation Glucose metabolism Diabetes biomarker
NEAT1 Nuclear organization Inflammation Disease progression

Functional Analysis Methods

Expression Analysis
  • RNA-seq
  • qRT-PCR
  • In situ hybridization
  • RNA pull-down
Interaction Studies
  • ChIRP-seq
  • RIP-seq
  • CHART-seq
  • RAP-MS

Therapeutic Applications

  • Gene Therapy Targets
  • Diagnostic Markers
  • Drug Response Predictors
  • Disease Monitoring Tools